Buildertrend + QuickBooks Troubleshooting

Buildertrend QuickBooks Sync Not Working?

The connection was running fine, and now it is not. Duplicates in QuickBooks, a change order that never posted, payments that do not match the deposit, or costs landing on the wrong job. This is fixable. Nearly every Buildertrend-to-QuickBooks Online failure traces back to one of a handful of root causes: a mapping that drifted, a name that changed on one side but not the other, or a workflow where two systems are both trying to create the same record. This guide diagnoses each failure type and tells you how to resolve it.

Before You Dig In

This page is for a broken sync, not a first-time setup

If you have never completed the initial Buildertrend-to-QuickBooks Online connection, start at our step-by-step setup guide before troubleshooting. The problems here assume the integration was working at some point and has since produced errors, missing data, or incorrect entries.

When an established sync starts misbehaving, the instinct is to disconnect and reconnect the integration. Resist that. A full reconnect without fixing the underlying problem usually just duplicates whatever already went wrong. Most sync failures do not require reinstalling anything. They require knowing which of the three or four root cause categories you are dealing with: authorization, mapping, naming, or workflow.

The three layers where things go wrong

  • Authorization layer: The OAuth token that lets Buildertrend talk to QuickBooks Online expires or gets revoked. Symptoms are sudden total sync failures with no data moving at all.
  • Mapping layer: A QuickBooks account, item, customer, or job that Buildertrend references was renamed, deleted, or never mapped. Symptoms are costs landing in the wrong place, failed pushes on specific record types, or new duplicate customer records.
  • Workflow layer: Someone is entering data in both systems instead of letting the sync own it, or a trigger setting does not match how the team actually works. Symptoms are duplicates, double-posted change orders, and payment amounts that never reconcile.

Work through the quick-check list below first. If the issue still is not clear, the problem cards further down walk through each failure type in full detail.

Quick Checks

Try these before anything else

Run through all eight before diving into individual problem cards. Most sync failures are solved at this stage.

Is the QuickBooks Online connection still authorized? In Buildertrend, go to Company Settings and confirm the QuickBooks connection status shows as active. OAuth tokens expire periodically and the connection must be re-authorized without reinstalling the integration.
Did anyone rename a Customer, Job, Item, or Account in QuickBooks? Buildertrend matches records by exact name. A rename on either side silently breaks the link and can create duplicate records or stall a push.
Is the Accounting Sync screen showing failed or pending records? Check the sync queue in Buildertrend for any records with a warning or error status. A single failed record at the front of the queue can block everything behind it.
Was the chart of accounts or cost-code mapping updated recently? A changed account number, renamed cost category, or deleted QuickBooks item can reroute costs to the wrong place or stall specific record types.
Did a change order get approved internally but not yet accepted by the client? Buildertrend can be set to sync change orders only after client acceptance. If that setting is on, approved-but-unaccepted change orders wait in the queue indefinitely.
Is there a manual entry in QuickBooks for the same transaction that Buildertrend is trying to sync? If someone entered a bill or invoice by hand in QuickBooks, and then Buildertrend pushed the same record, you have an instant duplicate.
Are customer portal payments both recording in Buildertrend and being manually deposited? Double-recording the same payment is one of the most common causes of a reconciliation that will not close.
Did anyone delete a transaction in one system that the other system still references? Buildertrend may hold a reference to a QuickBooks invoice that no longer exists, causing every subsequent push tied to that job to error out.
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Problem by Problem

Common sync failures and how to fix each one

Find the symptom that matches your situation. Each card explains what is causing it and the specific steps to resolve it.

Duplicate transactions in QuickBooks

Symptom: The same invoice, payment, or bill appears twice or more in QuickBooks after a sync runs.

Why it happens: The most common cause is a team member entering the transaction manually in QuickBooks at the same time Buildertrend is set to push it automatically. The second most common cause is a re-authorization event: if the integration was disconnected and reconnected while transactions were in a pending state, they can push twice. Deleting and recreating a transaction in Buildertrend can also generate a second QuickBooks record if the first one was already synced.

Fix: Identify which copy is the source of truth (always the one Buildertrend created via sync). Void or delete the manual duplicate in QuickBooks. Then establish a firm workflow rule: each transaction type is owned by one system. If invoices originate in Buildertrend, no one touches that transaction in QuickBooks unless the sync failed and they are correcting a specific error.

Change orders not posting or posting twice

Symptom: An approved change order never appeared in QuickBooks, or the original contract amount and the change amount both posted as separate line items, inflating the invoice total.

Why it happens: Buildertrend has a configurable trigger that controls when change orders push to QuickBooks Online. If it is set to sync only after client acceptance and the client has not yet acknowledged the change, the change order waits in the queue without any visible error. The double-posting variant happens when Buildertrend pushed an original invoice, the change order was then approved, and a revised invoice was pushed without voiding the first.

Fix: For stuck change orders: in Buildertrend's accounting settings, locate the change order sync trigger and decide whether it should fire on internal approval or client acceptance, then align it with your actual workflow. For double postings: void the original invoice in QuickBooks and keep the revised version, or use a credit memo to offset the overstatement. Going forward, confirm the trigger setting before approving a change order so you know when it will hit QuickBooks.

Customer portal payments do not match the bank deposit

Symptom: A client paid through the Buildertrend customer portal, but the amount showing in QuickBooks does not match what actually deposited in the bank account. The reconciliation shows an unresolved difference on every portal payment.

Why it happens: Buildertrend records the gross payment the client submitted. The payment processor (credit card or ACH) deducts its merchant fee before sending the net deposit to the bank. QuickBooks receives the gross payment figure; the bank statement shows the net amount. Without a separate entry for the fee, they will never match.

Fix: Record the merchant processing fee as a separate expense each time a portal payment posts, or configure the bank deposit in QuickBooks to show two lines: the full payment received and the fee deducted, netting to the bank deposit amount. This is not a Buildertrend bug; it is a bookkeeping step that must be built into the workflow for every portal payment. If these fees are piling up unrecorded, a cleanup pass through your merchant deposit history will clear the backlog.

Costs landing on the wrong job or cost code

Symptom: Bills or subcontractor costs that belong to one job appear in QuickBooks under a different job, or costs land in a generic overhead account instead of the specific cost code they should hit.

Why it happens: Every Buildertrend cost category must be mapped to a valid QuickBooks item or account. When someone adds a new cost category in Buildertrend without updating the accounting mapping, or when a QuickBooks account is renamed and the reference breaks, costs fall back to a default account or route to the wrong job entirely. This is also a common outcome when two jobs share a similar name and the name-matching algorithm picks the wrong one.

Fix: Open the accounting mapping settings in Buildertrend and audit every cost category. Confirm each one points to a currently named, active QuickBooks account or item. Broken or unmapped entries are usually highlighted. Once the mapping is corrected, manually reclassify any costs that already landed in the wrong place by editing the QuickBooks transaction directly. For recurring misrouting, check that job names in both systems are distinct enough that no ambiguity exists.

Unmapped items blocking specific record types

Symptom: The sync runs without error for most records, but specific invoices or bills consistently fail to push. The sync queue shows a warning or error icon next to those records, and retrying does not clear them.

Why it happens: Buildertrend requires a valid QuickBooks product or service item for every line it is trying to sync. If a line item in Buildertrend references a product or service that does not exist in QuickBooks Online (because it was deleted, deactivated, or was never created), the entire transaction can stall rather than push partially.

Fix: Open the failed record in the sync queue and note the specific item or account name it is trying to match. Search QuickBooks Online for that item. If it was deleted, restore it or create a replacement with the same name and re-map it in Buildertrend. If the item never existed in QuickBooks, create it and then map the corresponding Buildertrend cost category to it. Once the mapping is valid, use the retry function on the failed push.

The connection dropped and re-authorizing did not fix it

Symptom: Nothing is syncing at all. The connection looks active in Buildertrend settings, but nothing moves through the queue and re-authorizing seems to have no effect.

Why it happens: OAuth tokens issued by QuickBooks Online expire on a set cycle. If the token lapses while transactions are queued, they can accumulate in a failed state. Re-authorizing creates a new valid token, but the queued records that failed under the old token still need to be retried. If there is a record with a mapping error at the front of the queue, it will continue blocking everything even after re-authorization.

Fix: After re-authorizing, do not just wait for the sync to resume. Go into the sync queue and look for records in a failed state. Resolve the earliest one first, mapping or naming issues are the most common cause, then retry it. Work forward through the queue until everything is cleared. If the connection drops again within a short period, verify that the QuickBooks Online user whose credentials were used for the connection still has the correct access level.

Customer or job name mismatches creating new records

Symptom: Invoices push to the wrong customer in QuickBooks Online, or a customer who already exists gets a brand-new duplicate record as if they are a first-time client.

Why it happens: Buildertrend and QuickBooks Online match customers and sub-jobs by exact display name, including punctuation, spacing, and capitalization. If the Buildertrend job name is "Smith Residence Phase 2" and QuickBooks has "Smith, John: Phase 2," they do not match and QuickBooks creates a new customer record rather than linking to the existing one.

Fix: Choose one system as the naming source of truth, typically Buildertrend, and update QuickBooks to match exactly. Establish a naming convention before any new job is created and document it for the whole team. Merge any duplicate customer records that were created during the mismatch period using QuickBooks's merge function. Going forward, build the job in one system first, copy the name exactly, then create it in the other system.

Records edited or deleted in one system not updating the other

Symptom: You corrected an invoice amount or voided a bill in QuickBooks, but Buildertrend still shows the original figure. Or you deleted a record in Buildertrend and the entry in QuickBooks is still there.

Why it happens: The Buildertrend-to-QuickBooks Online sync is primarily one-directional for most record types: data flows from Buildertrend into QuickBooks, not back. Edits made directly in QuickBooks do not automatically update Buildertrend. Deletions in Buildertrend do not automatically void or delete the corresponding QuickBooks entry.

Fix: Corrections should always start in Buildertrend when possible, then re-sync. If you have already corrected something directly in QuickBooks, you need to decide whether to also update Buildertrend to match, or accept that the two systems will show different figures for that record. Document this as an exception. For voided or deleted transactions, manually void the corresponding QuickBooks entry if Buildertrend did not trigger that action automatically.

Tax or rounding discrepancies on synced invoices

Symptom: Invoice totals in Buildertrend and QuickBooks are off by small amounts. The difference is usually a few cents to a few dollars, and it appears consistently across multiple invoices.

Why it happens: Sales tax and rounding are calculated independently in each system. If Buildertrend calculates sales tax on a line-by-line basis and QuickBooks applies it to the invoice total, the rounding method can produce a small difference. Similarly, if tax rates or taxability rules differ between the two systems, the totals will diverge every time a taxable item is included.

Fix: Align the tax settings in both systems so taxability, rates, and rounding methods match. Check whether Buildertrend is configured to push the tax as a separate line item or embed it in the line total, and verify that QuickBooks is expecting the same structure. Ongoing penny differences almost always mean the tax configuration diverged at some point and needs to be reconciled.

Deep Dive

Why duplicates specifically keep happening

Duplicate transactions are the most common complaint with the Buildertrend-to-QuickBooks Online integration, and they have a specific structural cause that is worth understanding in detail because it keeps recurring until the workflow is fixed, not just the data.

The core duplicate mechanism

Both Buildertrend and QuickBooks Online are fully functional financial systems. Each one can create invoices, record payments, and track bills independently. When you connect them, you are running two systems that both know how to create the same transaction types. Unless you establish a clear rule about which system creates each record type, both systems will create them, and you will have duplicates.

The three most common duplicate triggers

  • Manual entry alongside the sync: A team member enters a vendor bill in QuickBooks because it is faster, not realizing Buildertrend will push the same bill during the next sync. The fix is a firm policy: if Buildertrend owns a transaction type, QuickBooks entry for that type is off-limits except to fix specific sync errors.
  • Re-authorization during a pending sync: The connection drops and is re-authorized while several transactions are sitting in the queue. The re-authorization can cause those queued records to push again, this time alongside records that already went through before the drop. This is a timing issue, not a software bug, and the fix is to audit the queue before re-authorizing to know what is pending.
  • Delete and recreate in Buildertrend: An invoice is created in Buildertrend, syncs to QuickBooks, and then is deleted and recreated in Buildertrend to fix a typo. The original QuickBooks entry was not voided, so now there are two. Always void or delete the QuickBooks record first before recreating the Buildertrend transaction.

How to prevent duplicates going forward

  • Write down which system owns each transaction type (invoices, bills, payments, change orders) and post it where the whole team can see it.
  • Never enter a transaction in QuickBooks that Buildertrend is configured to sync. Treat QuickBooks as read-only for those transaction types.
  • Before re-authorizing a dropped connection, review the sync queue and note what is pending so you can spot any double-posts after re-auth.
  • When you need to correct a synced transaction, void or delete the QuickBooks record first, then correct it in Buildertrend and let it re-sync.
Root Cause

Deeper structural issues: when the setup itself was never right

Some sync problems are not workflow errors or one-time accidents. They are symptoms of a chart of accounts or cost-code structure that was never configured correctly in the first place. If you have fixed individual errors but the same types of problems keep coming back, this is usually why.

Signs the underlying structure is the problem

  • Costs consistently mis-post to the same wrong accounts, even after you correct them.
  • Job-costing reports in QuickBooks never match what Buildertrend shows, even after a sync with no errors.
  • You have a large number of unmapped cost categories and have been ignoring them because mapping them is complicated.
  • Your QuickBooks chart of accounts was set up for a generic small business, not a construction company, and categories like "Cost of Goods Sold" are being used for everything from lumber to subcontractor labor.
  • Different people on the team categorize the same type of cost differently because there is no documented mapping.

What a proper construction cost structure looks like

A QuickBooks Online file set up for a construction company should have a chart of accounts with clear cost-of-goods or direct-cost subcategories for the major cost types: materials, subcontractors, labor, equipment, and permits. These categories should align directly with the cost codes in Buildertrend so that when a cost is assigned to a category in Buildertrend, it lands in the correct QuickBooks account automatically. If your QuickBooks chart of accounts does not have this structure, no amount of sync troubleshooting will produce clean job-cost reports. The data flows correctly but lands in the wrong buckets.

What a proper mapping looks like

Every cost category in Buildertrend should have a corresponding QuickBooks account or item designated. The mapping table in Buildertrend's accounting settings is where you make this connection. When it is complete and current, costs route correctly without any manual intervention. When it has gaps (common after adding new cost categories over time without updating the mapping), those unmapped costs either fail to sync or fall into a default account.

If your mapping has never been fully reviewed, doing that review once and completing it properly is the single highest-leverage fix for recurring sync issues. See our job costing guide for how to structure the cost codes correctly, and our integration service if you want us to do the rebuild for you.

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Prevention

Rules and cadence to keep the sync clean

Most recurring sync problems are workflow problems, not software problems. These rules prevent the common failure modes from coming back.

Own each transaction type in exactly one system. Decide now whether invoices originate in Buildertrend or in QuickBooks, same for bills and payments. Write it down and enforce it. The integration breaks when both systems try to create the same record.
Never rename an account, item, customer, or job without updating the other system first. Name changes are the single most common cause of a sync that was working and suddenly is not. Change the name in one system and immediately update the matching reference in the other before any sync runs.
Review the sync queue weekly. A five-minute check each Monday catches failed pushes before they stack up and compound into a cleanup project. Look for any record in a failed or warning state and resolve the root cause before it blocks the queue.
Complete the mapping table before adding new cost categories. Any time a new cost category is added in Buildertrend, the accounting mapping must be updated at the same time. Build this into the process so it is never an afterthought.
Audit the mapping quarterly. Over time, accounts get renamed or deleted in QuickBooks and the Buildertrend mapping silently breaks. A quarterly review of the full mapping table catches these before they cause mis-posts.
Document your merchant fee workflow and run it on every portal payment. Portal payment merchant fees will not reconcile themselves. Make the fee entry a required step in the payment receipt process, not something that gets done when you remember.
Test after any QuickBooks Online update or user permission change. Occasionally a QuickBooks Online update changes how the API handles certain record types, or a user whose credentials power the connection has their access level changed. Run a test push after any changes in QuickBooks to confirm the sync is still behaving as expected.
Establish a job naming convention and write it down. Before any new job is created, both systems should receive the same display name, formatted the same way. The person who creates the job in Buildertrend should create it in QuickBooks with the identical name at the same time.
When to Stop DIY

When the sync cleanup is bigger than a self-fix

Most individual sync errors described above can be resolved by someone with administrator access to both Buildertrend and QuickBooks Online and a few hours of focused work. But there are situations where the DIY approach makes things worse, not better.

Signs you need outside help

  • The sync has been producing errors for weeks or months and there is a large backlog of failed records, duplicate transactions, and mis-posted costs that all need to be untangled in the right order.
  • Your bank reconciliation has not closed in several months and you are not sure which transactions in QuickBooks are real and which are duplicates.
  • Job-cost reports show numbers that do not resemble actual project spend, suggesting the mapping has been wrong for a long time and a significant volume of transactions landed in the wrong place.
  • You have tried re-authorizing and fixing individual records but the same errors keep reappearing, suggesting the root cause is structural (chart of accounts, mapping, or workflow) rather than a one-off error.
  • A draw request or lender review is coming up and you need clean, reliable financials fast.

What a professional cleanup looks like

A proper sync cleanup does not start in the sync queue. It starts in QuickBooks with an audit of the current state of the books: what is duplicated, what is mis-posted, what is missing, and how far back the errors go. Then it works backward through the sync queue to understand the root cause of each failure. Then it corrects the mapping, the naming, and the workflow rules. Then it cleans up the QuickBooks file to match. In that order. Doing it in any other order creates new errors while trying to fix old ones.

FinTruction does this work for Buildertrend builders across the US. If you want to understand what a cleanup would actually involve for your specific books, the starting point is a free Sync Audit where we look at the QuickBooks file and the Buildertrend sync queue and tell you exactly what is wrong and what it would take to fix it. No obligation, no guesswork. See our integration service page for details on what done-for-you looks like.

This is exactly what we fix for builders.

Sync problems compound fast. A duplicate today becomes a misstatement on next month's financials, a reconciliation that will not close, and a draw package you cannot trust. FinTruction has cleaned up Buildertrend-to-QuickBooks Online integration issues for builders ranging from single-family custom homes to multi-project residential contractors.

We do a full Sync Audit: map every error in the queue, identify mismatched records, fix the underlying mapping, clean up the duplicates and mis-posts that already landed, and document the workflow rules that prevent it from happening again. Based in Coppell, Texas, working remotely with builders across the United States.

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Answers

Frequently Asked Questions

Why are there duplicate transactions in QuickBooks from Buildertrend?

Duplicates almost always mean the same transaction was entered manually in QuickBooks at the same time Buildertrend was set to push it automatically. They also appear after a re-authorization event if records were queued during the dropped connection and pushed again after re-auth. Fix: identify which record is the Buildertrend-synced version (check the sync queue history), delete the manually-entered duplicate, and establish a rule that QuickBooks transactions for Buildertrend-owned record types are never entered by hand.

Why is my Buildertrend QuickBooks sync not working at all, even after re-authorizing?

Re-authorizing creates a new valid token but does not clear or retry failed records in the sync queue. If there is a record with a mapping or naming error at the front of the queue, it blocks everything behind it even with a valid connection. After re-authorizing, go into the sync queue, find the earliest failed record, resolve its root cause (usually a missing mapping or renamed item), and then retry it. Work through the queue in order until it clears.

Why did my change order not sync to QuickBooks?

Buildertrend has a configurable setting that controls when change orders push to QuickBooks Online. If it is set to sync only after client acceptance and the client has not yet acknowledged the change order, it will sit in the queue with no visible error. Check the change order sync trigger in Buildertrend's accounting settings. If your workflow requires change orders to appear in QuickBooks before client acceptance, adjust the trigger to fire on internal approval instead.

Why do customer portal payments not match my bank deposit?

Buildertrend records the gross payment the client submitted. The payment processor deducts its merchant fee before depositing the net amount to your bank. QuickBooks receives the gross payment; the bank statement shows the net. To reconcile them, the processing fee must be recorded as a separate expense entry so the deposit shows the full payment received minus the fee, netting to the bank deposit amount. This step is required for every portal payment and will not happen automatically.

Why are costs posting to the wrong job or cost code in QuickBooks?

A broken or incomplete mapping is the most common cause. Every Buildertrend cost category must point to a currently named, active QuickBooks account or item. If a QuickBooks account was renamed, a cost category was added in Buildertrend without updating the mapping, or an item was deleted in QuickBooks, costs will mis-post to a default account or fail to sync. Open the accounting mapping in Buildertrend and verify every cost category has a valid QuickBooks target. Correct any gaps, then manually reclassify costs that already landed in the wrong account.

Why is Buildertrend creating new customer records in QuickBooks instead of matching existing ones?

The integration matches by exact display name. If the customer or job name in Buildertrend differs from QuickBooks by a comma, extra space, capitalization difference, or any other character, QuickBooks treats it as a new record. Standardize the naming convention in one platform and update the other to match exactly. Use QuickBooks's merge function to combine any duplicate customer records. Going forward, create the job in one system first and copy the name character-for-character into the other.

I corrected something in QuickBooks but the fix is not showing in Buildertrend. Why?

The Buildertrend-to-QuickBooks Online integration is primarily one-directional for most record types: data flows from Buildertrend into QuickBooks, not back. Edits made directly in QuickBooks do not update Buildertrend. For corrections to flow correctly, make the change in Buildertrend first and let it re-sync. If you have already corrected something in QuickBooks, you will need to decide whether to also update Buildertrend manually to keep the two systems consistent, or document it as a known exception.

Why do invoice totals in Buildertrend and QuickBooks not match exactly?

Small discrepancies, usually a few cents to a few dollars, are almost always a tax or rounding issue. Buildertrend and QuickBooks Online calculate sales tax and round amounts independently. If the taxability settings, tax rates, or rounding methods differ between the two systems, the totals will diverge on any invoice with taxable items. Align the tax configuration in both systems so rates, taxability rules, and rounding methods match. Check whether Buildertrend is pushing tax as a separate line or embedding it in the line total, and confirm QuickBooks is configured to expect the same structure.

What is the difference between this page and the how-to-sync setup guide?

This page covers an existing integration that has started misbehaving: duplicates, failed pushes, mis-posts, and dropped connections in a sync that was previously working. The setup guide covers making the initial connection from scratch for the first time. If you are setting up the integration for the first time and have not yet completed the initial connection, start there.

How long does it take to fix a Buildertrend QuickBooks sync problem?

A single isolated error, like one failed change order or one mis-mapped cost category, can usually be resolved in under an hour once the root cause is identified. A backlog of accumulated errors, duplicate transactions across multiple months, and structural mapping problems take significantly longer because each transaction must be reviewed and the QuickBooks file corrected in the right order. The scope depends entirely on how long the errors have been accumulating and how many transaction types are affected.

Can I fix the sync myself or do I need a bookkeeper?

Individual errors described on this page can be resolved by anyone with administrator access to both Buildertrend and QuickBooks Online who is willing to work methodically through the sync queue. Where it becomes a bookkeeping job rather than a settings fix is when there is a significant backlog of duplicate or mis-posted transactions that need to be identified, voided or deleted in the right order, and reclassified in QuickBooks without creating new errors. If your bank reconciliation is also behind, those two problems need to be untangled together, which requires understanding the full state of the books, not just the sync queue.

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They didn’t just record transactions and call it a day. They built a custom chart of accounts around how a remodeling company actually runs, did a full catch-up on years of bookkeeping inside QuickBooks Online, and now stay on top of my monthly bookkeeping and payroll. Every step, they broke it down in simple terms instead of burying me in accountant talk.

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FinTruction rebuilt the whole thing from the ground up, with real job costing, work in progress, and retainage. They didn’t just hand me reports and disappear; they walked me through my numbers until I understood them.

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When I came to FinTruction I had no financial structure. No job costing, no WIP tracking, books behind. They did a full cleanup and rebuilt job costing and WIP tracking in QuickBooks. Now I know what’s billed, what’s owed, and where every job stands.

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